Title |
Sequence analysis of the first B5 subgenogroup strain of enterovirus 71 isolated in Korea |
Author |
Yu Jung Won1, Lae Hyung Kang1, Ah Ra Lee1, Bomina Paik1, Hyun Kim1, Sung Geun Lee2, Seung Won Park3, Seung Jin Hong1*, and Soon Young Paik1* |
Address |
1Department of Microbiology, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea, 2Korea Zoonosis Research Institute, Jeonbuk National University, Iksan 54596, Republic of Korea, 3Department of Biotechnology, Daegu Catholic University, Gyeongsan-si, Gyeongsangbuk-do 38430, Republic of Korea |
Bibliography |
Journal of Microbiology, 58(5),422-429, 2020,
|
DOI |
10.1007/s12275-020-9539-z
|
Key Words |
human enterovirus A71, B5 subgenogroup, wholegenome
sequencing, phylogenetic analysis, Korea |
Abstract |
Enterovirus A71 (EV71), the main etiological agent of handfoot-
mouth disease (HFMD), circulates in many areas of the
world and has caused large epidemics since 1997, especially
in the Asia-Pacific region. In this study, we determined the
full-genome sequence of CMC718, a newly isolated EV71
strain in Korea. The CMC718 genome was 7,415 nucleotides
in length and was confirmed by whole-genome phylogenetic
analysis to belong to the B5 genotype. In particular, CMC718
demonstrated maximum identity with strain M988 of the B5
genotype and numerous amino acid variants were detected
in the 3D domain of the viral protein P3, which is consistent
with the mutation pattern of a B5 strain isolated in 2012–2013.
Comparison of the CMC718 sequence with other EV71 reference
strains confirmed the relationship and genetic variation
of CMC718. Our study was a full-genome sequence analysis
of the first EV71 strain of the B5 genotype isolated in
South Korea. This information will be a valuable reference
for the development of methods for the detection of recombinant
viruses, the tracking of infections, and the diagnosis
of EV71. |