| Title | Note-GA] Genome sequence of Caballeronia sordidicola strain PAMC 26577 isolated from Cladonia sp., an Arctic lichen species | ||
| Author | Jhung Ahn Yang1, Soon Gyu Hong2, and Hyun-Myung Oh1* | ||
| Address | 1Department of Marine-Bio Convergence Science, Specialized Graduate School Science & Technology Convergence, Pukyong National University, Busan 48547, Republic of Korea, 2Division of Polar Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea | ||
| Bibliography | Korean Journal of Microbiology, 53(2),141-143, 2017 | ||
| DOI | https://doi.org/10.7845/kjm.2017.7037 | ||
| Key Words | Caballeronia sordidicola, Cladonia, Arctic, genome, lichen | ||
| Abstract | Caballeronia sordidicola strain PAMC 26577 was isolated from Cladonia sp., a lichen collected from Svalbard Archipelago in the Arctic Ocean. Draft genomic sequences of PAMC 26577 were determined using Illumina and 182 contigs were submitted to GenBank and N50 value was 159,226. The genome of PAMC 26577 was comprised of 8,334,211 base pairs and %G+C content was 59.4. The genome included 8 ribosomal RNA genes and 51 tRNA genes as non-coding sequences. Protein-coding genes were 8,065 in number and they included central metabolism genes as well as butanol/butyrate biosynthesis, polyhydroxybutyrate metabolism, serine cycle methylotrophy genes, and glycogen metabolism. Membrane transporters were more than two-hundreds in number, but sugar phosphotransferase system and TRAP transporters were lacking. PAMC 26577 lacked CRISPR-associated sequences and proteins. No transposable elements were observed and there were only limited number of phage remnant regions with 11 phage-related genes. | ||
| Download PDF | 53(2)_13_p.141-143.pdf | ||